https://redmine.dataone.org/https://redmine.dataone.org/favicon.ico2016-05-10T01:57:57ZDataONE TasksMember Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=275682016-05-10T01:57:57ZLaura Moyerslmoyers1@utk.edu
<ul><li><strong>Assignee</strong> set to <i>Chris Jones</i></li><li><strong>File</strong> <a href="/attachments/download/475/griidcDataOneObjectFormats.xml">griidcDataOneObjectFormats.xml</a><a href="/attachments/475/griidcDataOneObjectFormats.xml"><img src="/images/magnifier.png" alt="Magnifier" /></a> added</li><li><strong>File</strong> <a href="/attachments/download/474/griidcDataOneObjectFormats.txt">griidcDataOneObjectFormats.txt</a><a href="/attachments/474/griidcDataOneObjectFormats.txt"><img src="/images/magnifier.png" alt="Magnifier" /></a> added</li></ul><p>Joe has sent a list of object formats in use at GRIIDC. Other formats may need to be added to the formats list in future, as identified by data submitters.</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283482017-01-13T16:33:16ZLaura Moyerslmoyers1@utk.edu
<ul><li><strong>Status</strong> changed from <i>New</i> to <i>Closed</i></li><li><strong>% Done</strong> changed from <i>0</i> to <i>100</i></li></ul><p>No new object formats required.</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283502017-01-13T17:14:00ZChris Jonescjones@nceas.ucsb.edu
<ul><li><strong>Assignee</strong> changed from <i>Chris Jones</i> to <i>Jing Tao</i></li></ul><p>Jing,</p>
<p>will you go through this list that Joe provided and add missing formats to the list? I see that the format names need to be more descriptive and compared with what's in PRONOM. Also, the @@ elements should be added, and the @@s should be vetted against the IANA list before we assign them.</p>
<p>Thanks!</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283512017-01-13T17:15:04ZLaura Moyerslmoyers1@utk.edu
<ul><li><strong>% Done</strong> changed from <i>100</i> to <i>30</i></li><li><strong>Status</strong> changed from <i>Closed</i> to <i>In Progress</i></li></ul><p>Whoops, still verifying that some of the requested formats have been added.</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283532017-01-13T23:32:36ZJing Taotao@nceas.ucsb.edu
<ul></ul><p>We already have those format ids which exactly match the format ids in their list:</p>
<p>application/x-gzip<br>
video/avi<br>
application/x-bzip2<br>
text/csv<br>
application/msword<br>
application/vnd.openxmlformats-officedocument.wordprocessingml.document<br>
image/gif<br>
application/x-gzip<br>
image/jpeg<br>
video/mp4<br>
application/pdf<br>
application/vnd.openxmlformats-officedocument.presentationml.presentation<br>
application/x-rar-compressed<br>
application/x-tar<br>
text/plain<br>
video/x-ms-wmv<br>
application/vnd.ms-excel<br>
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet<br>
application/xml<br>
application/zip</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283542017-01-13T23:39:50ZJing Taotao@nceas.ucsb.edu
<ul></ul><p>They have the tab-separated-value in this way: <br>
<br>
<br>
text/tab-separated-values<br>
Tab Separated Values<br>
DATA<br>
.tsv<br>
<br>
<br>
We have it in another way(different format id):<br>
<br>
<br>
text/tsv<br>
Tab Separated Values Text<br>
DATA<br>
<br><br>
tsv<br>
</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283552017-01-13T23:43:30ZJing Taotao@nceas.ucsb.edu
<ul></ul><p>They have this format id:</p>
<p>application/vnd.ms-excel.sheet.macroenabled.12<br>
Microsoft Excel - Macro-Enabled Workbook<br>
DATA<br>
.xlsm<br>
<br>
</p>
<p>We don't have the exactly identical one, but a very close one. Can they use our one?<br>
<br>
<br>
application/vnd.ms-excel.sheet.binary.macroEnabled.12<br><br>
Microsoft Office Excel 2007 binary workbooks<br>
DATA<br>
<br>
xls</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283562017-01-13T23:53:36ZJing Taotao@nceas.ucsb.edu
<ul></ul><p>Their list has a general format id for netcdf:<br>
<br>
<br>
application/x-netcdf<br>
Network Common Data Form (NetCDF)<br>
DATA<br>
.nc<br>
</p>
<p>However, we has more specific netcdf version form ids:<br>
from 1.0 to 1.4, 3 and 4. <br>
Can they just use ours?</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283572017-01-14T00:02:41ZJing Taotao@nceas.ucsb.edu
<ul></ul><p>They have three items with the same format id:<br>
<br>
<br>
application/octet-stream<br>
NeuroExplorer<br>
DATA<br>
.nex</p>
<p>application/octet-stream<br>
Origin Project<br>
DATA<br>
.opj</p>
<p>application/octet-stream<br>
Sequence Read Archive<br>
DATA<br>
.sra<br>
</p>
<p>We have the general one:<br>
<br>
<br>
application/octet-stream<br><br>
Octet Stream<br>
DATA<br>
<br>
data<br>
<br>
<br>
Can they just use our general one to replace the three ones?</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=283582017-01-14T00:10:01ZJing Taotao@nceas.ucsb.edu
<ul></ul><p>Those are the format ids we don't have (totally 5 format ids):</p>
<p>application/x-7z-compressed<br>
application/msaccess<br>
magnus-internal/cgi<br>
chemical/seq-aa-fasta (FASTA nucleic acid or protein sequences as character strings)<br>
application/x-compressed (gzipped tar file)</p>
<p>Their current definitions are:<br>
<br>
<br>
application/x-7z-compressed<br>
7-Zip<br>
DATA<br>
.7z</p>
<p>application/msaccess<br>
Microsoft Office Access 2007 Database<br>
DATA<br>
.accdb</p>
<p>magnus-internal/cgi<br>
Common Gateway Interface<br>
DATA<br>
.cgi</p>
<p>chemical/seq-aa-fasta<br>
FASTA nucleic acid or protein sequences as character strings<br>
DATA<br>
.fna</p>
<p>application/x-compressed<br>
gzipped tar file<br>
DATA<br>
.tgz<br>
</p>
Member Nodes - Task #7780: GRIIDC: Register any new object formats in all environmentshttps://redmine.dataone.org/issues/7780?journal_id=300242018-03-06T15:26:07ZMark Servillamark.servilla@gmail.com
<ul><li><strong>% Done</strong> changed from <i>30</i> to <i>100</i></li><li><strong>Status</strong> changed from <i>In Progress</i> to <i>Closed</i></li></ul><p>No new formats have been identified since GRIIDC went into production.</p>