DataONE Tasks: Issueshttps://redmine.dataone.org/https://redmine.dataone.org/favicon.ico2019-06-19T01:44:19ZDataONE Tasks
Redmine Infrastructure - Bug #8822 (New): Account queries in STAGE-2 failing from web browserhttps://redmine.dataone.org/issues/88222019-06-19T01:44:19ZBryce Mecummecum@nceas.ucsb.edu
<p>Steps to reproduce:</p>
<ol>
<li>Visit <a href="https://search-stage-2.test.dataone.org/">https://search-stage-2.test.dataone.org/</a></li>
<li>Log in</li>
<li>Navigate to <a href="https://search-stage-2.test.dataone.org/data">https://search-stage-2.test.dataone.org/data</a></li>
<li>Observe an HTTP 500 in the Network pane of whichever browser you're using to <a href="https://search-stage-2.test.dataone.org/cn/v2/accounts/?query=%7BYOUR_DN%7D">https://search-stage-2.test.dataone.org/cn/v2/accounts/?query={YOUR_DN}</a></li>
</ol>
<p>Response body:</p>
<pre><?xml version="1.0" encoding="UTF-8"?>
<error detailCode="500" errorCode="500" name="ServiceFailure">
<description>Internal Server Error: The server encountered an unexpected condition which prevented it from fulfilling the request.</description>
</error>
</pre>
<p>Some notes:</p>
<ul>
<li>I notice this in multiple browsers</li>
<li>I notice this only when the request is issued from MetacatUI, not when I visit the URL in my browser or hit it with curl</li>
<li>I don't notice this error on search.dataone.org</li>
<li>MetacatUI on search.dataone.org doesn't even issue this request</li>
<li>MetacatUI on stage-2 is at v2.4.2 and on search is at 2.6.1</li>
</ul>
<p>It seems like a bug to me that we see a service failure but I'm not sure if this is a MetacatUI bug or an issue in the CN stack (i.e., Apache config or something) but I wanted to file it for someone to take a look.</p>
Member Nodes - MNDeployment #7973 (New): Alaska Energy Data Gatewayhttps://redmine.dataone.org/issues/79732017-01-27T15:19:28ZLaura Moyerslmoyers1@utk.edu
<p>At a meeting 26 January 2017, it was mentioned that GINA is working with the Alaska Energy Data Gateway on a proposal where there is a component for implementing a DataONE Member Node for AEDG. This is still very early in the proposal stage, but the possibility exists for an AEDG MN in future.</p>
Member Nodes - MNDeployment #7962 (Deferred): Alaska EPSCoRhttps://redmine.dataone.org/issues/79622017-01-09T19:00:08ZRebecca Koskelarkoskela@unm.edu
<p>GINA also runs the Alaska EPSCoR repository and because it's a separate project, it should also be a separate MN</p>
<p><a href="http://www.alaska.edu/epscor/">http://www.alaska.edu/epscor/</a><br>
Current portal that is hosted by GINA: <a href="http://epscor.alaska.edu/">http://epscor.alaska.edu/</a></p>
Member Nodes - MNDeployment #7851 (New): CESAB - Center for Synthesis and Analysis for Biodiversityhttps://redmine.dataone.org/issues/78512016-07-22T13:57:50ZLaura Moyerslmoyers1@utk.edu
<p><a href="http://www.cesab.org/index.php/fr/">http://www.cesab.org/index.php/fr/</a> (in French)</p>
<p>CESAB is the Synthesis and Analysis center for biodiversity data in France. In a meeting with ECOSCOPE and CESAB on 21 July (see epad <a href="https://epad.dataone.org/pad/p/ECOSCOPE_and_DataONE">https://epad.dataone.org/pad/p/ECOSCOPE_and_DataONE</a>), Alison Specht said that CESAB is interesting in working with DataONE, particularly as a Member Node. </p>
<p>CESAB doesn't have a data discovery portal at the moment, but they do have about 5 projects which have delivered data, some of which is exposed and some of which is metadata-only. There are ~100,000, objects, another project with ~6,000 objects coming soon. Some of these are private (metadata is public but data is private). There is some EML metadata, but it has been difficult to create appropriate EML metadata for some contributors.</p>
<p>First steps are to continue discussions and gather information about CESAB's current and future content and identify the best MN solution for them.</p>
Infrastructure - Story #7807 (New): cn.synchronize should support synchronization failure correct...https://redmine.dataone.org/issues/78072016-05-13T16:56:25ZRob Nahfrnahf@epscor.unm.edu
<p>cn.synchronize(session, identifier) works well for its original purpose (supporting MN-driven system metadata updates, and MN-driven push synchronization), but doesn't seem to work for manual synchronization failure workflows. The main problem is that the request can only be made by the MN itself (using the MN client certificate). </p>
<p>As we envision a centralized dashboard for monitoring failed synchronization items, how do we address this situation? </p>
<p>The synchronization processing queue needs both the pid and a nodeId from where to retrieve the object. the NodeId is not specified directly in the method call, but gleaned from the session by a reverse lookup from the certificate. (It uses the first node found in the NodeList where the Node.subject field matches the certificate subject).</p>
<p>Should we allow node.contactSubjects into the algorithm?<br>
Should we add nodeId as a parameter?</p>
DataONE API - Bug #7684 (New): Call to MNStorage.update() via REST API returns java.lang.StackOve...https://redmine.dataone.org/issues/76842016-03-21T23:07:39ZBryce Mecummecum@nceas.ucsb.edu
<p>I was trying to update an object via the REST API via cURL and forgot to enter the correct URL. The cURL command I used and response is:</p>
<p>$ curl -X PUT -H "Authorization: Bearer $TOKEN" -F "pid=resourceMap_doi:10.5065/D6G44NFV" -F "object=@object.xml" -F "sysmeta=@sysmeta.xml" -F "newPid=resourceMap_doi:10.5065/D6G44NFV_v3" $URL<br>
<?xml version="1.0" encoding="UTF-8"?><br>
java.lang.StackOverflowError<br>
</p>
<p>Where $URL was '<a href="https://arcticdata.io/metacat/d1/mn/v2/object">https://arcticdata.io/metacat/d1/mn/v2/object</a>' instead of '<a href="https://arcticdata.io/metacat/d1/mn/v2/object/resourceMap_doi:10.5065/D6G44NFV">https://arcticdata.io/metacat/d1/mn/v2/object/resourceMap_doi:10.5065/D6G44NFV</a>'</p>
<p>I expected to receive some sort of warning/error that I had forgotten to specify the URL properly for this call but instead saw a StackOverflowError.</p>
Member Nodes - MNDeployment #7052 (New): BaMBa - Brazilian Marine Biodiversity Databasehttps://redmine.dataone.org/issues/70522015-04-17T19:58:11ZLaura Moyerslmoyers1@utk.edu
<p>Luiz Gadelha forwarded a MNDD to <a href="mailto:support@dataone.org">support@dataone.org</a>. We need to set up a getting-to-know-you meeting with interested parties.</p>
<p><a href="https://marinebiodiversity.lncc.br">https://marinebiodiversity.lncc.br</a></p>
Member Nodes - MNDeployment #3684 (New): Branner Earth Sciences Library - Stanford Universityhttps://redmine.dataone.org/issues/36842013-03-22T16:57:33ZLaura Moyerslmoyers1@utk.edu
<p>From DataONE website "contact us" – Want to be DUG member</p>
<p>Website: <a href="http://www-sul.stanford.edu/depts/branner/">http://www-sul.stanford.edu/depts/branner/</a><br>
Entity: Branner Earth Sciences Library – Stanford University<br>
POC: <a href="mailto:winklerh@stanford.edu">winklerh@stanford.edu</a><br>
Date of inquiry: 7/25/12<br>
Responder: Andrew Sallans<br>
Date of response: 8/24/12<br>
Response: You're added. Info on DUG.</p>
Member Nodes - MNDeployment #3633 (New): Bay Delta Member Nodehttps://redmine.dataone.org/issues/36332013-03-01T15:42:38ZJohn Cobbjohnw.cobb+dataoneRM@gmail.com
<p>MN lead from Bob Cook at the AGU meeting.</p>
<p>The following note is from a January 21, 2013 e-mail</p>
<p>Hi Mike and John</p>
<p>Have you seen this?</p>
<p>Bay Delta Live:<br>
<a href="http://www.baydeltalive.com/">http://www.baydeltalive.com/</a></p>
<p>At AGU, I met one of the staff who run the data system behind this Web site (pulling data from various sources in near real time) and visualizing for resource managers.</p>
<p>They are interested in becoming a DataONE Member Node.</p>
<p>Attached is a talk they sent: </p>
<p>Something worth considering!<br>
Bob</p>
Member Nodes - MNDeployment #3520 (New): ARCTOS Collaborative Collection Management Solutionhttps://redmine.dataone.org/issues/35202013-01-25T19:33:16ZRebecca Koskelarkoskela@unm.edu
<p>Arctos is a collaborative Collection Management Information System that currently serves over 1.7 million records from multiple natural history collections. The data reside in an Oracle database administered by the Texas Advanced Computing Center. We are looking for off-site options for data backup and disaster recovery, and would like to discuss the possibility of partnering with DataONE for this purpose. Perhaps we can set up a conference call to discuss this?</p>
<p>Contacts:Carla Cicero <a href="mailto:ccicero@berkeley.edu">ccicero@berkeley.edu</a> <br>
Dusty McDonald <a href="mailto:dustymc@gmail.com">dustymc@gmail.com</a>,<br>
Chris Jordan <a href="mailto:ctjordan@tacc.utexas.edu">ctjordan@tacc.utexas.edu</a>,<br>
Link Olson <a href="mailto:leolson@alaska.edu">leolson@alaska.edu</a>,<br>
Gordon Jarrell <a href="mailto:gordon.jarrell@gmail.com">gordon.jarrell@gmail.com</a></p>
<p>Conference Call on 24 January 2013</p>
Member Nodes - MNDeployment #3258 (New): CitSci.org MNhttps://redmine.dataone.org/issues/32582012-09-20T20:44:30ZBruce Wilsonbwilso27@utk.edu
<p>CitSci.org provides a toolset, including the hosting of data, for citizen science (PPSR -- public participation in science and research) projects. CitSci.org currently hosts data from approximately 50 such projects. Greg Newman (Colorado State University) is the lead on CitSci.org and is a member of the PPSR working group. </p>
<p>Handling of streaming (mutable) data is a key need. </p>
Member Nodes - MNDeployment #3241 (New): ALA - Atlas of Living Australia member nodehttps://redmine.dataone.org/issues/32412012-09-07T01:46:59ZDave Vieglaisdave.vieglais@gmail.com
<p>The Atlas of Living Australia has been identified as a potential member node. This issue track progress towards that goal.</p>
<p>ALA - <a href="http://www.ala.org.au/">http://www.ala.org.au/</a></p>
Member Nodes - MNDeployment #3240 (New): AZGS - Arizona Geological Survey member nodehttps://redmine.dataone.org/issues/32402012-09-07T01:45:24ZDave Vieglaisdave.vieglais@gmail.com
<p>The Arizona Geological Survey (AZGS) has been identified as a potential member node. This issue track progress towards that goal.</p>
<p>Lee Allison has been identified as an initial contact.</p>
<p><a href="http://www.azgs.az.gov/">http://www.azgs.az.gov/</a></p>
Infrastructure - Task #2286 (New): Change Exceptions.InvalidToken to Exceptions.InvalidSessionhttps://redmine.dataone.org/issues/22862012-02-03T02:57:36ZRoger Dahldahl@unm.eduInfrastructure - Task #1585 (New): add exec-maven-plugin to trigger python integration tests at v...https://redmine.dataone.org/issues/15852011-05-23T22:34:17ZRob Nahfrnahf@epscor.unm.edu
<p>see:</p>
<p><a href="http://steveberczuk.blogspot.com/2009/12/continuous-integration-of-python-code.html">http://steveberczuk.blogspot.com/2009/12/continuous-integration-of-python-code.html</a><br>
and<br>
<a href="http://mojo.codehaus.org/exec-maven-plugin/examples/example-exec-using-plugin-dependencies.html">http://mojo.codehaus.org/exec-maven-plugin/examples/example-exec-using-plugin-dependencies.html</a></p>