DataONE Tasks: Issueshttps://redmine.dataone.org/https://redmine.dataone.org/favicon.ico2017-01-31T21:41:45ZDataONE Tasks
Redmine Member Nodes - MNDeployment #8009 (New): Geometabolomehttps://redmine.dataone.org/issues/80092017-01-31T21:41:45ZLaura Moyerslmoyers1@utk.edu
<p>Email from Aron Stubbins (<a href="mailto:Aron.Stubbins@skio.uga.edu">Aron.Stubbins@skio.uga.edu</a>) 6 December 2016:</p>
<blockquote>
<p>Myself, Rob Fatland (ccd) and an international team of researchers have been developing a data system for dissolved organic matter data that provides novel, standardized ways to process the data allowing better comparison of data across studies, state-of-the-science processing to groups outside of the core groups developing these techniques, plus other more common data system attributes (archiving, indexing, DOIs etc.).</p>
<p>We have been developing on a shoestring budget and to make the system sustainable and fully functional for the community, we need some additional support. Could we discuss how we might tie into DataONE both functionally (potential connections between data bases) and where we might get funding through DataONE or related programs.</p>
</blockquote>
<p>Rob Fatland (<a href="mailto:rob5@uw.edu">rob5@uw.edu</a>) said in subsequent email 14 December 2016:</p>
<blockquote>
<p>I think that the technical steps will not be terribly daunting when we get ready to coordinate with DataONE and it follows the API-driven federation model which we favor, so that's great. </p>
</blockquote>
<p>NEXT STEPS: Laura to set up exploratory meeting with Geometabolome.</p>
Member Nodes - MNDeployment #7973 (New): Alaska Energy Data Gatewayhttps://redmine.dataone.org/issues/79732017-01-27T15:19:28ZLaura Moyerslmoyers1@utk.edu
<p>At a meeting 26 January 2017, it was mentioned that GINA is working with the Alaska Energy Data Gateway on a proposal where there is a component for implementing a DataONE Member Node for AEDG. This is still very early in the proposal stage, but the possibility exists for an AEDG MN in future.</p>
Member Nodes - MNDeployment #7962 (Deferred): Alaska EPSCoRhttps://redmine.dataone.org/issues/79622017-01-09T19:00:08ZRebecca Koskelarkoskela@unm.edu
<p>GINA also runs the Alaska EPSCoR repository and because it's a separate project, it should also be a separate MN</p>
<p><a href="http://www.alaska.edu/epscor/">http://www.alaska.edu/epscor/</a><br>
Current portal that is hosted by GINA: <a href="http://epscor.alaska.edu/">http://epscor.alaska.edu/</a></p>
Member Nodes - MNDeployment #7851 (New): CESAB - Center for Synthesis and Analysis for Biodiversityhttps://redmine.dataone.org/issues/78512016-07-22T13:57:50ZLaura Moyerslmoyers1@utk.edu
<p><a href="http://www.cesab.org/index.php/fr/">http://www.cesab.org/index.php/fr/</a> (in French)</p>
<p>CESAB is the Synthesis and Analysis center for biodiversity data in France. In a meeting with ECOSCOPE and CESAB on 21 July (see epad <a href="https://epad.dataone.org/pad/p/ECOSCOPE_and_DataONE">https://epad.dataone.org/pad/p/ECOSCOPE_and_DataONE</a>), Alison Specht said that CESAB is interesting in working with DataONE, particularly as a Member Node. </p>
<p>CESAB doesn't have a data discovery portal at the moment, but they do have about 5 projects which have delivered data, some of which is exposed and some of which is metadata-only. There are ~100,000, objects, another project with ~6,000 objects coming soon. Some of these are private (metadata is public but data is private). There is some EML metadata, but it has been difficult to create appropriate EML metadata for some contributors.</p>
<p>First steps are to continue discussions and gather information about CESAB's current and future content and identify the best MN solution for them.</p>
Member Nodes - MNDeployment #7758 (New): Polar Rock Repository (PRR) at Ohio Statehttps://redmine.dataone.org/issues/77582016-05-02T23:50:40ZLaura Moyerslmoyers1@utk.edu
<p>The Polar Rock Repository (PRR) at the Ohio State University holds over 40,000 physical specimens which are available to be "checked out" by users. Laura/Mark met with Anne Grunow and Wes Haines 4/28/16 to discuss DataONE, the PRR, and how we might work together. See <a href="https://epad.dataone.org/pad/p/PRR_and_DataONE">https://epad.dataone.org/pad/p/PRR_and_DataONE</a></p>
Member Nodes - MNDeployment #7549 (New): COS - the Center for Open Sciencehttps://redmine.dataone.org/issues/75492015-12-14T21:10:21ZLaura Moyerslmoyers1@utk.edu
<p>This is to document activity related to the possible collaboration with COS as a Member Node. See website <a href="https://cos.io/">https://cos.io/</a></p>
Member Nodes - MNDeployment #7163 (New): UN Environmental Programme World Conservation Monitoring...https://redmine.dataone.org/issues/71632015-06-07T17:14:16ZLaura Moyerslmoyers1@utk.edu
<p>Key holding: World database of protected lands<br>
Dependencies: They are in the process of implementing CSW. So, we need the slender node and we need them to get their CSW up.<br>
Location: Cambridge, England</p>
Member Nodes - MNDeployment #7145 (New): PlutoFhttps://redmine.dataone.org/issues/71452015-06-03T12:52:55ZLaura Moyerslmoyers1@utk.edu
<p>PlutoF is hosted at the University of Tartu in Estonia and "provides cloud database and computing services for the taxonomical, ecological, phylogenetical, etc. research. The purpose of the platform is to provide synergy through common modules for the classifications, taxon names, analytical tools, etc. It allows to address integrated questions in ecology and coevolution of taxa. Different types of the species occurrences, viz. preserved specimens, DNA sequences, human observations, references can be stored in PlutoF as well. PlutoF has no restrictions on taxon and geographic coverage and therefore can be used for the databasing interacting taxa. It includes also collection management module. Few examples of the public web outputs from PlutoF are Estonian eBiodiversity (<a href="http://elurikkus.ut.ee">http://elurikkus.ut.ee</a>), and molecular key for fungi (<a href="https://unite.ut.ee)">https://unite.ut.ee)</a>."</p>
<p>Anticipate GMN for this implementation. They currently hold ~500,000 biodiversity records.</p>
<p>For more information about PlutoF, see references in these articles: <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023303/">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023303/</a>, </p>
<p><a href="http://www.la-press.com/plutofa-web-based-workbench-for-ecological-and-taxonomic-research-with-article-a2406">http://www.la-press.com/plutofa-web-based-workbench-for-ecological-and-taxonomic-research-with-article-a2406</a></p>
Member Nodes - MNDeployment #7052 (New): BaMBa - Brazilian Marine Biodiversity Databasehttps://redmine.dataone.org/issues/70522015-04-17T19:58:11ZLaura Moyerslmoyers1@utk.edu
<p>Luiz Gadelha forwarded a MNDD to <a href="mailto:support@dataone.org">support@dataone.org</a>. We need to set up a getting-to-know-you meeting with interested parties.</p>
<p><a href="https://marinebiodiversity.lncc.br">https://marinebiodiversity.lncc.br</a></p>
Member Nodes - MNDeployment #7048 (Deferred): USGS Regional Climate Centershttps://redmine.dataone.org/issues/70482015-04-17T17:24:19ZBruce Wilsonbwilso27@utk.eduMember Nodes - MNDeployment #6359 (New): SiBBrhttps://redmine.dataone.org/issues/63592014-09-05T19:38:43ZBen Leinfelderleinfelder@nceas.ucsb.edu
<p>At a GBIF-sponsored workshop/meeting in Petropolis, I did a few seminars on Metacat and Morpho. There's potential interest in a MN if/when they set up a Metacat repository for their ecological data research as part of the larger biodiversity/LTER-style network they are building.<br>
<a href="http://www.sibbr.gov.br/">http://www.sibbr.gov.br/</a><br>
Primary contact: Luiz Gadelha <a href="mailto:lgadelha@lncc.br">lgadelha@lncc.br</a><br>
Debora Drucker (who we know from PPBIO/PELD) is also aware of this initiative and supports the idea of a centralized repository hosted at LNCC (national scientific computing lab).</p>
Member Nodes - MNDeployment #4227 (New): TRY Plant Trait Databasehttps://redmine.dataone.org/issues/42272014-01-17T11:48:28ZLaura Moyerslmoyers1@utk.edu
<p>Jens Kattge directs the international Plant Traits Database and is interested in joining DataONE as a Member Node. (Initial contact with Bill.)</p>
<p>Contact info:<br>
Jens Kattge <a href="mailto:jkattge@bgc-jena.mpg.de">jkattge@bgc-jena.mpg.de</a> <br>
website: <a href="http://www.try-db.org" class="external">www.try-db.org</a></p>
Member Nodes - MNDeployment #4224 (New): Japan Long Term Ecological Research Network https://redmine.dataone.org/issues/42242014-01-09T19:49:17ZLaura Moyerslmoyers1@utk.edu
<p>(JaLTER)Japan Long Term Ecological Research Network, <a href="http://www.jalter.org" class="external">www.jalter.org</a><br>
POC: Nobu Ohte</p>
<p>Nobu Ohte met Dave at the International Conference on Open Data in Biodiversity and Ecological Research in November 2013. JaLTER is interested in learning more about working with DataONE, and Nobu plans to introduce DataONE to JaLTER people at their steering committee meeting in March. </p>
Member Nodes - MNDeployment #3691 (New): National Institute for Amazon Researchhttps://redmine.dataone.org/issues/36912013-03-22T17:04:37ZLaura Moyerslmoyers1@utk.edu
<p>From DataONE website "contact us" – How to contribute, I have something to offer</p>
<p>Website: <a href="http://www.inpa.gov.br/">http://www.inpa.gov.br/</a> (in Portuguese)<br>
Entity: National Institute for Amazon Research<br>
POC: <a href="mailto:lcampos@inpa.gov.br">lcampos@inpa.gov.br</a><br>
Date of inquiry: 6/26/12<br>
Responder: Matt Jones<br>
Date of response: 7/19/12<br>
Response: Let's meet and discuss</p>
Member Nodes - MNDeployment #3690 (New): Digital Library of Vertebrate Morphology, University of ...https://redmine.dataone.org/issues/36902013-03-22T17:03:50ZLaura Moyerslmoyers1@utk.edu
<p>From DataONE website "contact us" – How to, link to data providers</p>
<p>Website: <a href="http://www.digimorph.org/">http://www.digimorph.org/</a><br>
Entity: Digital Library of Vertebrate Morphology, University of Texas<br>
POC: <a href="mailto:rowe@mail.utexas.edu">rowe@mail.utexas.edu</a><br>
Date of inquiry: 6/12/12<br>
Responder: Amber Budden<br>
Date of response: 6/8/12<br>
Response: Become a MN</p>