DataONE Tasks: Issueshttps://redmine.dataone.org/https://redmine.dataone.org/favicon.ico2019-06-19T01:44:19ZDataONE Tasks
Redmine Infrastructure - Bug #8822 (New): Account queries in STAGE-2 failing from web browserhttps://redmine.dataone.org/issues/88222019-06-19T01:44:19ZBryce Mecummecum@nceas.ucsb.edu
<p>Steps to reproduce:</p>
<ol>
<li>Visit <a href="https://search-stage-2.test.dataone.org/">https://search-stage-2.test.dataone.org/</a></li>
<li>Log in</li>
<li>Navigate to <a href="https://search-stage-2.test.dataone.org/data">https://search-stage-2.test.dataone.org/data</a></li>
<li>Observe an HTTP 500 in the Network pane of whichever browser you're using to <a href="https://search-stage-2.test.dataone.org/cn/v2/accounts/?query=%7BYOUR_DN%7D">https://search-stage-2.test.dataone.org/cn/v2/accounts/?query={YOUR_DN}</a></li>
</ol>
<p>Response body:</p>
<pre><?xml version="1.0" encoding="UTF-8"?>
<error detailCode="500" errorCode="500" name="ServiceFailure">
<description>Internal Server Error: The server encountered an unexpected condition which prevented it from fulfilling the request.</description>
</error>
</pre>
<p>Some notes:</p>
<ul>
<li>I notice this in multiple browsers</li>
<li>I notice this only when the request is issued from MetacatUI, not when I visit the URL in my browser or hit it with curl</li>
<li>I don't notice this error on search.dataone.org</li>
<li>MetacatUI on search.dataone.org doesn't even issue this request</li>
<li>MetacatUI on stage-2 is at v2.4.2 and on search is at 2.6.1</li>
</ul>
<p>It seems like a bug to me that we see a service failure but I'm not sure if this is a MetacatUI bug or an issue in the CN stack (i.e., Apache config or something) but I wanted to file it for someone to take a look.</p>
Member Nodes - Task #8723 (New): tDAR: Implemented IP Whitelisting on tDAR systems / Impacts to r...https://redmine.dataone.org/issues/87232018-10-02T16:51:19ZMonica Ihliemail@monicaihli.com
<p>tdar has implemented IP whitelisting on their member node. Requests from IP addresses not whitelisted will be refused. Was provided CN IPs for production. The reports that ping Tdar MN for up status will fail unless it happens to be executed from an IP that can be provided. This may or may not be considered a big enough issue to do something about. No harm is actually being done as long as the CNs can get in and do their business. </p>
Member Nodes - MNDeployment #8009 (New): Geometabolomehttps://redmine.dataone.org/issues/80092017-01-31T21:41:45ZLaura Moyerslmoyers1@utk.edu
<p>Email from Aron Stubbins (<a href="mailto:Aron.Stubbins@skio.uga.edu">Aron.Stubbins@skio.uga.edu</a>) 6 December 2016:</p>
<blockquote>
<p>Myself, Rob Fatland (ccd) and an international team of researchers have been developing a data system for dissolved organic matter data that provides novel, standardized ways to process the data allowing better comparison of data across studies, state-of-the-science processing to groups outside of the core groups developing these techniques, plus other more common data system attributes (archiving, indexing, DOIs etc.).</p>
<p>We have been developing on a shoestring budget and to make the system sustainable and fully functional for the community, we need some additional support. Could we discuss how we might tie into DataONE both functionally (potential connections between data bases) and where we might get funding through DataONE or related programs.</p>
</blockquote>
<p>Rob Fatland (<a href="mailto:rob5@uw.edu">rob5@uw.edu</a>) said in subsequent email 14 December 2016:</p>
<blockquote>
<p>I think that the technical steps will not be terribly daunting when we get ready to coordinate with DataONE and it follows the API-driven federation model which we favor, so that's great. </p>
</blockquote>
<p>NEXT STEPS: Laura to set up exploratory meeting with Geometabolome.</p>
Member Nodes - MNDeployment #7973 (New): Alaska Energy Data Gatewayhttps://redmine.dataone.org/issues/79732017-01-27T15:19:28ZLaura Moyerslmoyers1@utk.edu
<p>At a meeting 26 January 2017, it was mentioned that GINA is working with the Alaska Energy Data Gateway on a proposal where there is a component for implementing a DataONE Member Node for AEDG. This is still very early in the proposal stage, but the possibility exists for an AEDG MN in future.</p>
Member Nodes - MNDeployment #7851 (New): CESAB - Center for Synthesis and Analysis for Biodiversityhttps://redmine.dataone.org/issues/78512016-07-22T13:57:50ZLaura Moyerslmoyers1@utk.edu
<p><a href="http://www.cesab.org/index.php/fr/">http://www.cesab.org/index.php/fr/</a> (in French)</p>
<p>CESAB is the Synthesis and Analysis center for biodiversity data in France. In a meeting with ECOSCOPE and CESAB on 21 July (see epad <a href="https://epad.dataone.org/pad/p/ECOSCOPE_and_DataONE">https://epad.dataone.org/pad/p/ECOSCOPE_and_DataONE</a>), Alison Specht said that CESAB is interesting in working with DataONE, particularly as a Member Node. </p>
<p>CESAB doesn't have a data discovery portal at the moment, but they do have about 5 projects which have delivered data, some of which is exposed and some of which is metadata-only. There are ~100,000, objects, another project with ~6,000 objects coming soon. Some of these are private (metadata is public but data is private). There is some EML metadata, but it has been difficult to create appropriate EML metadata for some contributors.</p>
<p>First steps are to continue discussions and gather information about CESAB's current and future content and identify the best MN solution for them.</p>
Member Nodes - MNDeployment #7758 (New): Polar Rock Repository (PRR) at Ohio Statehttps://redmine.dataone.org/issues/77582016-05-02T23:50:40ZLaura Moyerslmoyers1@utk.edu
<p>The Polar Rock Repository (PRR) at the Ohio State University holds over 40,000 physical specimens which are available to be "checked out" by users. Laura/Mark met with Anne Grunow and Wes Haines 4/28/16 to discuss DataONE, the PRR, and how we might work together. See <a href="https://epad.dataone.org/pad/p/PRR_and_DataONE">https://epad.dataone.org/pad/p/PRR_and_DataONE</a></p>
Member Nodes - MNDeployment #7549 (New): COS - the Center for Open Sciencehttps://redmine.dataone.org/issues/75492015-12-14T21:10:21ZLaura Moyerslmoyers1@utk.edu
<p>This is to document activity related to the possible collaboration with COS as a Member Node. See website <a href="https://cos.io/">https://cos.io/</a></p>
Member Nodes - MNDeployment #7145 (New): PlutoFhttps://redmine.dataone.org/issues/71452015-06-03T12:52:55ZLaura Moyerslmoyers1@utk.edu
<p>PlutoF is hosted at the University of Tartu in Estonia and "provides cloud database and computing services for the taxonomical, ecological, phylogenetical, etc. research. The purpose of the platform is to provide synergy through common modules for the classifications, taxon names, analytical tools, etc. It allows to address integrated questions in ecology and coevolution of taxa. Different types of the species occurrences, viz. preserved specimens, DNA sequences, human observations, references can be stored in PlutoF as well. PlutoF has no restrictions on taxon and geographic coverage and therefore can be used for the databasing interacting taxa. It includes also collection management module. Few examples of the public web outputs from PlutoF are Estonian eBiodiversity (<a href="http://elurikkus.ut.ee">http://elurikkus.ut.ee</a>), and molecular key for fungi (<a href="https://unite.ut.ee)">https://unite.ut.ee)</a>."</p>
<p>Anticipate GMN for this implementation. They currently hold ~500,000 biodiversity records.</p>
<p>For more information about PlutoF, see references in these articles: <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023303/">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023303/</a>, </p>
<p><a href="http://www.la-press.com/plutofa-web-based-workbench-for-ecological-and-taxonomic-research-with-article-a2406">http://www.la-press.com/plutofa-web-based-workbench-for-ecological-and-taxonomic-research-with-article-a2406</a></p>
Member Nodes - MNDeployment #3691 (New): National Institute for Amazon Researchhttps://redmine.dataone.org/issues/36912013-03-22T17:04:37ZLaura Moyerslmoyers1@utk.edu
<p>From DataONE website "contact us" – How to contribute, I have something to offer</p>
<p>Website: <a href="http://www.inpa.gov.br/">http://www.inpa.gov.br/</a> (in Portuguese)<br>
Entity: National Institute for Amazon Research<br>
POC: <a href="mailto:lcampos@inpa.gov.br">lcampos@inpa.gov.br</a><br>
Date of inquiry: 6/26/12<br>
Responder: Matt Jones<br>
Date of response: 7/19/12<br>
Response: Let's meet and discuss</p>
Member Nodes - MNDeployment #3683 (New): Purdue University Librarieshttps://redmine.dataone.org/issues/36832013-03-22T16:56:43ZLaura Moyerslmoyers1@utk.edu
<p>From DataONE website "contact us" – Want to be DUG member 2nd request</p>
<p>Website: <a href="http://www.lib.purdue.edu/">http://www.lib.purdue.edu/</a><br>
Entity: Purdue University Libraries<br>
POC: <a href="mailto:jcarlso9@gmail.com">jcarlso9@gmail.com</a><br>
Date of inquiry: 12/19/12<br>
Responder: Amber Budden<br>
Date of response: 1/2/13<br>
Response: Added to list. Please send welcome letter.</p>
Member Nodes - MNDeployment #3480 (New): Globe.govhttps://redmine.dataone.org/issues/34802013-01-11T18:21:34ZJohn Cobbjohnw.cobb+dataoneRM@gmail.com
<p>Globe.gov - saw DataONE poster at ESIP and Amber has call scheduled with them next<br>
week [week of Jan 16-20, 2013]</p>
Member Nodes - MNDeployment #3258 (New): CitSci.org MNhttps://redmine.dataone.org/issues/32582012-09-20T20:44:30ZBruce Wilsonbwilso27@utk.edu
<p>CitSci.org provides a toolset, including the hosting of data, for citizen science (PPSR -- public participation in science and research) projects. CitSci.org currently hosts data from approximately 50 such projects. Greg Newman (Colorado State University) is the lead on CitSci.org and is a member of the PPSR working group. </p>
<p>Handling of streaming (mutable) data is a key need. </p>
Member Nodes - MNDeployment #3240 (New): AZGS - Arizona Geological Survey member nodehttps://redmine.dataone.org/issues/32402012-09-07T01:45:24ZDave Vieglaisdave.vieglais@gmail.com
<p>The Arizona Geological Survey (AZGS) has been identified as a potential member node. This issue track progress towards that goal.</p>
<p>Lee Allison has been identified as an initial contact.</p>
<p><a href="http://www.azgs.az.gov/">http://www.azgs.az.gov/</a></p>
Member Nodes - MNDeployment #3235 (New): LITS - Long-Term Individual base Time Series project me...https://redmine.dataone.org/issues/32352012-09-07T01:19:49ZDave Vieglaisdave.vieglais@gmail.com
<p>LITS - the UK Long-term Individual based Time Series project has been identified as a potential member node. This issue track progress towards that goal.</p>
<p><a href="http://lits.bio.ic.ac.uk:8080/litsproject/">http://lits.bio.ic.ac.uk:8080/litsproject/</a></p>
Member Nodes - MNDeployment #3176 (New): QUT member nodehttps://redmine.dataone.org/issues/31762012-09-05T01:45:37ZDave Vieglaisdave.vieglais@gmail.com
<p>The node is described as "Queensland University of Technology, Australian supersite network"</p>